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1 - 100 of 149 models shown for query: All.

lr_withcompartments.bngl
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Author:

toy-jim.bngl
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Author:

egfr_net.bngl
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Ralser2007_Carbohydrate_Rerouting_ROS
Tags: cellular response to oxidative stress Pentose phosphate pathway - Saccharomyces cerevisiae (budding yeast) pentose-phosphate shunt
Author: Ralser M Wamelink MM Kowald A Gerisch B Heeren G Struys EA Klipp E Jakobs C Breitenbach M Lehrach H Krobitsch S

Holzhutter2004_Erythrocyte_Metabolism
Tags: glycolytic process Glycolysis / Gluconeogenesis - Homo sapiens (human)
Author: Holzhtter HG

output479.bngl
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Author:

Goldbeter1991-MinMitOscil
Tags: Cell cycle - Homo sapiens (human)
Author: Goldbeter A

output197.bngl
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Author:

Carbo2013-MucosalImmuneResponseduringH.pyloriInfection
Tags:
Author: Carbo A Bassaganya-Riera J Pedragosa M Viladomiu M Marathe M Eubank S Wendelsdorf K Bisset K Hoops S Deng X Alam M Kronsteiner B Mei Y Hontecillas R

Saucerman2006_PKA
Tags: adenylate cyclase-modulating G-protein coupled receptor signaling pathway
Author: Saucerman JJ Zhang J Martin JC Peng LX Stenbit AE Tsien RY McCulloch AD

Smallbone2011_TrehaloseBiosynthesis
Tags: trehalose biosynthetic process
Author: Smallbone K Malys N Messiha HL Wishart JA Simeonidis E

Conant2007_glycolysis_2C
Tags: Glycolysis / Gluconeogenesis - Saccharomyces cerevisiae (budding yeast)
Author: Conant GC Wolfe KH

Ralser2007_Carbohydrate_Rerouting_ROS
Tags: Pentose phosphate pathway - Saccharomyces cerevisiae (budding yeast) pentose-phosphate shunt cellular response to oxidative stress
Author: Ralser M Wamelink MM Kowald A Gerisch B Heeren G Struys EA Klipp E Jakobs C Breitenbach M Lehrach H Krobitsch S

Novak1997-CellCycle
Tags: Cell cycle
Author: Novak B Tyson JJ

Veening2008_DegU_Regulation
Tags: entry of bacterium into host cell
Author: Veening JW Igoshin OA Eijlander RT Nijland R Hamoen LW Kuipers OP

Thomsen1988_AdenylateCyclase_Inhibition
Tags: heterotrimeric G-protein complex cycle
Author: Thomsen WJ Jacquez JA Neubig RR

Wolf2001_Respiratory_Oscillations
Tags:
Author: Wolf J Sohn H Heinrich R Kuriyama H

Yamada2003_JAK_STAT_SOCS1_knockout
Tags: Jak-STAT signaling pathway - Mus musculus (mouse)
Author: Yamada S Shiono S Joo A Yoshimura A

Bungay2006_Plasma
Tags: blood coagulation
Author: Bungay SD Gentry PA Gentry RD

Bertram2006_Endothelin
Tags: adenylate cyclase-modulating G-protein coupled receptor signaling pathway
Author: Bertram R Tabak J Toporikova N Freeman ME

Smallbone2013-Serinebiosynthesis
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Author: Smallbone K Stanford NJ

Akman2008_Circadian_Clock_Model2
Tags: circadian rhythm
Author: Akman OE Locke JC Tang S Carr I Millar AJ Rand DA

Rodriguez-Caso2006_Polyamine_Metabolism
Tags: polyamine metabolic process
Author: Rodrguez-Caso C Montaez R Cascante M Snchez-Jimnez F Medina MA

Cao2013-ApplicationofABSISmethodinbirth-deathprocess
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Author: Cao Y Liang J

Proctor2006_telomere
Tags: cell cycle checkpoint Cell cycle - yeast - Saccharomyces cerevisiae (budding yeast)
Author: Proctor CJ Lydall DA Boys RJ Gillespie CS Shanley DP Wilkinson DJ Kirkwood TB

Tyson1991-CellCycle6var
Tags: Cell cycle - yeast - Saccharomyces cerevisiae (budding yeast)
Author: Tyson JJ

Sttzel2012-Bovineestrouscycle,synchronizationwithprostaglandinF2
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Author: Sttzel C Plntzke J Heuwieser W Rblitz S

Obeyesekere1999_CellCycle
Tags: mitotic cell cycle Cell cycle - Homo sapiens (human)
Author: Obeyesekere MN Zimmerman SO Tecarro ES Auchmuty G

Teusink1998_Glycolysis_TurboDesign
Tags: Glycolysis / Gluconeogenesis - Saccharomyces cerevisiae (budding yeast) glycolytic process
Author: Teusink B Walsh MC van Dam K Westerhoff HV

Wajima2009_BloodCoagulation_warfarin_heparin
Tags: regulation of blood coagulation
Author: Wajima T Isbister GK Duffull SB

Leloup2003_CircClock_LD
Tags: Circadian rhythm - Homo sapiens (human) entrainment of circadian clock
Author: Leloup JC Goldbeter A Leloup JC Goldbeter A

Leloup2003_CircClock_DD_REV-ERBalpha
Tags: Circadian rhythm - Homo sapiens (human) circadian rhythm
Author: Leloup JC Goldbeter A Leloup JC Goldbeter A

Leloup1998_CircClock_LD
Tags: circadian rhythm
Author: Leloup JC Goldbeter A Leloup JC Goldbeter A

Rozi2003_GlycogenPhosphorylase_Activation
Tags: calcium-mediated signaling phosphorylase kinase regulator activity Calcium signaling pathway - Homo sapiens (human)
Author: Rozi A Jia Y

Pokhilko2012_CircClock_RepressilatorFeedbackloop
Tags: circadian rhythm
Author: Pokhilko A Fernndez AP Edwards KD Southern MM Halliday KJ Millar AJ

Singh2006_TCA_Ecoli_glucose
Tags: glyoxylate cycle Citrate cycle (TCA cycle)
Author: Singh VK Ghosh I

Leloup1999_CircClock
Tags: Circadian rhythm - Homo sapiens (human) circadian rhythm
Author: Leloup JC Goldbeter A Leloup JC Goldbeter A

Hong2009_CircadianClock
Tags: Circadian rhythm
Author: Hong CI Zmborszky J Csiksz-Nagy A

Ratushny2012_SPF_I
Tags:
Author: Ratushny AV Saleem RA Sitko K Ramsey SA Aitchison JD

Singh2006_TCA_mtu_model1
Tags: Citrate cycle (TCA cycle) glyoxylate cycle
Author: Singh VK Ghosh I

Tyson1991-CellCycle2var
Tags: mitotic cell cycle Cell cycle - yeast - Saccharomyces cerevisiae (budding yeast)
Author: Tyson JJ

Ratushny2012_ASSURE_II
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Author: Ratushny AV Saleem RA Sitko K Ramsey SA Aitchison JD

Proctor2008_p53_Mdm2_ATM
Tags: p53 signaling pathway - Homo sapiens (human)
Author: Proctor CJ Gray DA

Palini2011_Minimal_2_Feedback_Model
Tags: transmembrane histidine kinase cytokinin receptor activity
Author: Palani S Sarkar CA

Blum2000_LHsecretion_1
Tags: phospholipase C-activating G-protein coupled receptor signaling pathway luteinizing hormone secretion
Author: Blum JJ Reed MC Janovick JA Conn PM

Hockin2002_BloodCoagulation
Tags: blood coagulation
Author: Hockin MF Jones KC Everse SJ Mann KG

Hoefnagel2002_PyruvateBranches
Tags: pyruvate metabolic process Pyruvate metabolism
Author: Hoefnagel MH Starrenburg MJ Martens DE Hugenholtz J Kleerebezem M Van Swam II Bongers R Westerhoff HV Snoep JL

Hockin1999_BloodCoagulation_VaInactivation
Tags: blood coagulation
Author: Hockin MF Cawthern KM Kalafatis M Mann KG

Cao2013-ApplicationofABSISmethodinthebistableSchlglmodel
Tags:
Author: Cao Y Liang J

Bungay2003_Thrombin_Generation
Tags: blood coagulation
Author: Bungay SD Gentry PA Gentry RD

Goldbeter1991-MinMitOscil
Tags: mitotic cell cycle
Author: Goldbeter A Gardner TS Dolnik M Collins JJ

Stone1996_NOsGC
Tags: nitric oxide mediated signal transduction
Author: Stone JR Marletta MA

Ratushny2012_SPF
Tags:
Author: Ratushny AV Saleem RA Sitko K Ramsey SA Aitchison JD

Romond1999_CellCycle
Tags: Cell cycle - Homo sapiens (human)
Author: Romond PC Rustici M Gonze D Goldbeter A

Sivakumar2011_NotchSignalingPathway
Tags: Notch signaling pathway
Author: Sivakumar KC Dhanesh SB Shobana S James J Mundayoor S

Hoffmann2002_WT_IkBNFkB_Signaling
Tags: T cell receptor signaling pathway - Mus musculus (mouse)
Author: Hoffmann A Levchenko A Scott ML Baltimore D

Yamada2003_JAK_STAT_pathway
Tags: Jak-STAT signaling pathway - Mus musculus (mouse)
Author: Yamada S Shiono S Joo A Yoshimura A

output439.bngl
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Author:

Markevich2004_MAPK_orderedElementary
Tags: MAPK cascade
Author: Markevich NI Hoek JB Kholodenko BN

Poolman2004_CalvinCycle
Tags: reductive pentose-phosphate cycle
Author: Poolman MG Assmus HE Fell DA

Proctor2005-Actionsofchaperonesandtheirroleinageing
Tags: chaperone mediated protein folding requiring cofactor
Author: Proctor CJ Soti C Boys RJ Gillespie CS Shanley DP Wilkinson DJ Kirkwood TB

Curto1998-purinemetabolism
Tags: purine nucleobase metabolic process Purine metabolism - Homo sapiens (human)
Author: Curto R Voit EO Sorribas A Cascante M

Thomsen1989_AdenylateCyclase
Tags: heterotrimeric G-protein complex cycle
Author: Thomsen WJ Neubig RR

Firczuk2013-EukaryoticmRNAtranslationmachinery
Tags: translation
Author: Firczuk H Kannambath S Pahle J Claydon A Beynon R Duncan J Westerhoff H Mendes P McCarthy JE

Schaber2006_Pheromone_Starvation_Crosstalk
Tags: pheromone metabolic process
Author: Schaber J Kofahl B Kowald A Klipp E

Wajima2009_BloodCoagulation_PTtest
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Author: Wajima T Isbister GK Duffull SB

Elowitz2000-Repressilator
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Author: Elowitz MB Leibler S

Cao2013-ApplicationofABSISinthetheenzymaticfutilecycle
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Author: Cao Y Liang J

Xie2007_CircClock
Tags: Circadian rhythm - fly - Drosophila melanogaster (fruit fly) circadian rhythm
Author: Xie Z Kulasiri D

Sivakumar2011_HedgehogSignalingPathway
Tags: smoothened signaling pathway
Author: Sivakumar KC Dhanesh SB Shobana S James J Mundayoor S

Goldbeter1995_CircClock
Tags: circadian rhythm
Author: Goldbeter A

Huang1996-UltrasensitivityinMAPKcascade
Tags: MAPK cascade
Author: Huang CY Ferrell JE Jr

Smolen2002_CircClock
Tags: circadian rhythm
Author: Smolen P Baxter DA Byrne JH

Kim2007-CrosstalkbetweenWntandERKpathways
Tags: Wnt signaling pathway - Homo sapiens (human)
Author: Kim D Rath O Kolch W Cho KH

Singh2006_TCA_mtu_model2
Tags: Citrate cycle (TCA cycle) tricarboxylic acid cycle
Author: Singh VK Ghosh I

Queralt2006_MitoticExit_Cdc55DownregulationBySeparase
Tags: mitotic cell cycle
Author: Queralt E Lehane C Novak B Uhlmann F

Zhu2007_TF_modulated_by_Calcium
Tags: calcium-mediated signaling
Author: Zhu CL Zheng Y Jia Y

Novak2001_FissionYeast_CellCycle
Tags: Cell cycle - yeast - Schizosaccharomyces pombe (fission yeast)
Author: Novak B Pataki Z Ciliberto A Tyson JJ

Edelstein1996-EPSPAChevent
Tags: neuromuscular synaptic transmission
Author: Edelstein SJ Schaad O Henry E Bertrand D Changeux JP

Vernoux2011_AuxinSignaling_AuxinFluctuating
Tags: auxin-activated signaling pathway
Author: Vernoux T Brunoud G Farcot E Morin V Van den Daele H Legrand J Oliva M Das P Larrieu A Wells D Gudon Y Armitage L Picard F <author>Guyomarc'h S</author> Cellier C Parry G Koumproglou R Doonan JH Estelle M Godin C Kepinski S Bennett M De Veylder L Traas J

Cao2013-ApplicationofABSISmethodinthereversibleisomerizationmodel
Tags:
Author: Cao Y Liang J

Hoffmann2002_KnockOut_IkBNFkB_Signaling
Tags: T cell receptor signaling pathway - Mus musculus (mouse)
Author: Hoffmann A Levchenko A Scott ML Baltimore D

Cronwright2002_Glycerol_Synthesis
Tags: glycerol biosynthetic process Glycerolipid metabolism - Saccharomyces cerevisiae (budding yeast)
Author: Cronwright GR Rohwer JM Prior BA

Oxhamre2005_Ca_oscillation
Tags: inositol phosphate-mediated signaling Calcium signaling pathway - Rattus norvegicus (rat)
Author: Oxhamre C Richter-Dahlfors A Zhdanov VP Kasemo B

Rehm2006_Caspase
Tags: activation of cysteine-type endopeptidase activity involved in apoptotic process
Author: Rehm M Huber HJ Dussmann H Prehn JH

Westermark2003_Pancreatic_GlycOsc_extended
Tags: glycolytic process Glycolysis / Gluconeogenesis
Author: Westermark PO Lansner A

Ueda2001_CircClock
Tags: circadian rhythm
Author: Ueda HR Hagiwara M Kitano H

Xu2003-Phosphoinositideturnover
Tags: phosphatidylinositol metabolic process Phosphatidylinositol signaling system
Author: Xu C Watras J Loew LM

Pritchard2002_glycolysis
Tags: glycolytic process Glycolysis / Gluconeogenesis - Saccharomyces cerevisiae (budding yeast)
Author: Pritchard L Kell DB

Besozzi2012-OscillatoryregimesintheRas/cAMP/PKApathwayinS.cerevisiae
Tags: Meiosis - yeast - Saccharomyces cerevisiae (budding yeast)
Author: Besozzi D Cazzaniga P Pescini D Mauri G Colombo S Martegani E

Singh2006_TCA_Ecoli_acetate
Tags: glyoxylate cycle Citrate cycle (TCA cycle)
Author: Singh VK Ghosh I

Tyson2001_Cell_Cycle_Regulation
Tags: Cell cycle - yeast
Author: Tyson JJ Novak B

Noguchi2013-Insulindependentglucosemetabolism
Tags:
Author: Noguchi R Kubota H Yugi K Toyoshima Y Komori Y Soga T Kuroda S

Saeidi2012-QuorumsensingdevicethatproducesGFP
Tags: quorum sensing
Author: Nazanin Saeidi Mohamed Arshath Matthew Wook Chang and Chueh Loo Poh

Bhartiya2003_Tryptophan_operon
Tags: tryptophan biosynthetic process
Author: Bhartiya S Rawool S Venkatesh KV

Cao2008-Networkofatoggleswitch
Tags:
Author: Cao Y Liang J

Chan2004_TCell_receptor_activation
Tags: T cell receptor signaling pathway - Homo sapiens (human)
Author: Chan C Stark J George AJ

Leloup1998_CircClock_LD
Tags: circadian rhythm
Author: Leloup JC Goldbeter A Goldbeter A

Wajima2009_BloodCoagulation_aPTTtest
Tags:
Author: Wajima T Isbister GK Duffull SB

Hernjak2005_Calcium_Signaling
Tags: Long-term depression - Homo sapiens (human)
Author: Hernjak N Slepchenko BM Fernald K Fink CC Fortin D Moraru II Watras J Loew LM

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